Plot the vulnerability to predation of species by weight

Plot the vulnerability to predation of species by weight

Usage

plotVulnerable(
  object,
  species = NULL,
  all.sizes = FALSE,
  time_step = NULL,
  return_data = FALSE,
  ...
)

plotlyVulnerable(
  object,
  species = NULL,
  all.sizes = FALSE,
  return_data = FALSE,
  ...
)

Arguments

object

An object of class MizerParams or MizerSim. If a MizerSim object is provided, the abundance at the last time step is used.

species

The species to be selected. Optional. By default all species are selected. A vector of species names, or a numeric vector with the species indices, or a logical vector indicating for each species whether it is to be selected (TRUE) or not.

all.sizes

If TRUE, then vulnerability is plotted also for sizes outside a species' size range. Default FALSE.

time_step

If object is a MizerSim object, this optional parameter specifies which time step to use for calculating vulnerability. Default is the last time step.

return_data

A boolean value that determines whether the formatted data used for the plot is returned instead of the plot itself. Default value is FALSE.

...

unused

Value

A ggplot2 object, unless return_data = TRUE, in which case a data frame the vulnerability at each size

Details

When called with a MizerParams object the initial vulnerability is plotted. The complement of refuge.

See also

plotting_functions, setRefuge(), plotRefugeProfile()

Other plotting functions: plot2Productivity(), plot2TotalBiomass(), plotDegScale(), plotDegradationScale(), plotProductivity(), plotProductivityRelative(), plotRefugeDensity(), plotRefugeProfile(), plotRelativeContribution(), plotSpectraChange(), plotTotalAbundance(), plotTotalBiomass(), plotTotalBiomassRelative()