Plot the total biomass for each species in a size range

This functions creates a barplot with the biomass of each specie within a size range. Usually used in conjunction with plotProductivity() to check for decoupling.

Usage

plotTotalBiomass(
  object,
  species = NULL,
  min_fishing_l = NULL,
  max_fishing_l = NULL,
  return_data = FALSE,
  ...
)

plotlyTotalBiomass(object, ...)

Arguments

object

An object of class MizerParams or MizerSim. If a MizerSim object is provided, the biomass at the last time step is used.

species

The species to be selected. Optional. By default all species are selected. A vector of species names, or a numeric vector with the species indices, or a logical vector indicating for each species whether it is to be selected (TRUE) or not.

min_fishing_l

The minimum length (cm) for biomass estimates. Defaults to smallest size.

max_fishing_l

The maximum length (cm) of for biomass estimates. Defaults to max length.

return_data

A boolean value that determines whether the formatted data used for the plot is returned instead of the plot itself. Default value is FALSE.

...

unused

Value

A ggplot2 object

See also

plotBiomass(), plot2TotalBiomass(), plotTotalBiomassRelative(), plotProductivity(), plot2Productivity(), plotProductivityRelative()

Other plotting functions: plot2Productivity(), plot2TotalBiomass(), plotDegScale(), plotDegradationScale(), plotProductivity(), plotProductivityRelative(), plotRefugeDensity(), plotRefugeProfile(), plotRelativeContribution(), plotSpectraChange(), plotTotalAbundance(), plotTotalBiomassRelative(), plotVulnerable()