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Plot refuge density through time

Source: R/reef-analysis_plots.R
plotRefugeDensity.Rd

Plots the refuge density at each size bin through time as colored lines, showing how refuge degrades over the course of a simulation. Uses viridis color scale to represent temporal succession.

Usage

plotRefugeDensity(sim, return_data = FALSE, ...)

plotlyRefugeDensity(sim, ...)

Arguments

sim

A MizerSim object

return_data

A boolean value that determines whether the formatted data used for the plot is returned instead of the plot itself. Default value is FALSE.

...

Unused

Value

A ggplot2 object, unless return_data = TRUE, in which case a data frame with refuge density at each size and time

See also

plotting_functions, setRefuge(), reefDegrade()

Other plotting functions: plot2Productivity(), plot2TotalBiomass(), plotDegScale(), plotDegradationScale(), plotProductivity(), plotProductivityRelative(), plotRefugeProfile(), plotRelativeContribution(), plotSpectraChange(), plotTotalAbundance(), plotTotalBiomass(), plotTotalBiomassRelative(), plotVulnerable()