Prepare a steady state model for projections with degradation

This function stores degradation parameters in the other_params slot of the params object.

Usage

setDegradation(params, trajectory, deg_scale, bleach_time = 2, ...)

Arguments

params

a mizer object

trajectory

The trajectory for degraded reefs. Options are "rubble", "algae", or "recovery"

deg_scale

A 2 x 2 array (refuge size x years post bleaching) that gives the values for scaling the refuge density at each size bin. Default scaling matrices for 15 years with the "rubble", "algae", and "recovery" trajectories are included as data objects in the package.

bleach_time

The year of the simulation to implement bleaching. Defaults to year 2.

...

Unused

Value

A mizer object with updated degradation parameters profiles

See also

algae_dynamics_cc(),detritus_dynamics_cc(), tune_UR_cc(), reefDegrade()